U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nif3l1.S NGG1 interacting factor 3 like 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 779400, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    nif3l1.S
    Official Full Name
    NGG1 interacting factor 3 like 1 S homeolog
    Primary source
    Xenbase:XB-GENE-6078750
    Locus tag
    XELAEV_18047959mg
    See related
    EnsemblRapid:ENSXLAG00005009626
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    nif3l1; nif3l1.L
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nif3l1.S in Genome Data Viewer
    Location:
    chromosome: 9_10S
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (111394110..111400188)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (103616484..103622518)

    Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121398921 Neighboring gene peptidylprolyl isomerase like 3 S homeolog Neighboring gene phosphoribosylformylglycinamidine synthase S homeolog Neighboring gene epidermis specific serine protease S homeolog

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC154449

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    NGG1 interacting factor 3 like 1 S homeolog
    Names
    NGG1 interacting factor 3 like 1 L homeolog
    NIF3 NGG1 interacting factor 3-like 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097018.1 → NP_001090487.1  NGG1 interacting factor 3 like 1 S homeolog

      See identical proteins and their annotated locations for NP_001090487.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123210
      UniProtKB/TrEMBL
      Q0IHC9
      Conserved Domains (1) summary
      pfam01784
      Location:6 → 324
      NIF3; NIF3 (NGG1p interacting factor 3)

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      111394110..111400188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018237647.2 → XP_018093136.1  NGG1 interacting factor 3 like 1 S homeolog isoform X1

      UniProtKB/TrEMBL
      A0A1L8ERE3, A0A974BWA8
      Related
      ENSXLAP00005028163.1, ENSXLAT00005028900.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.