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    LOC4344541 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344541, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344541
    Gene description
    succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like
    Locus tag
    OSNPB_080120000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Ip; sdhB; rps14; SDH2-1; OJ1005_B05.29-1; OJ1005_B05.29-2
    Expression
    Broad expression in flower buds (RPKM 82.7), flowers (RPKM 81.1) and 6 other tissues See more
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    Genomic context

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    See LOC4344541 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1102382..1105918, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1091207..1094685, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CO3-like Neighboring gene photosystem II core complex proteins psbY, chloroplastic Neighboring gene protein STICHEL-like 2 Neighboring gene uncharacterized LOC136351349

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins. Kubo N, et al. Proc Natl Acad Sci U S A, 1999 Aug 3. PMID 10430921, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aerobic respiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in respiratory electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial
    Names
    Iron-sulfur subunit of complex II
    LOC_Os08g02640
    mitochondrial ribosomal portein S14
    mitochondrial ribosomal protein S14
    succinate dehydrogenase iron-protein subunit (SDHB)
    NP_001390296.1
    NP_001390297.1
    NP_001390298.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403367.1 → NP_001390296.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK059789, BT130534, CI289148
      UniProtKB/TrEMBL
      A2YQQ8, A3BP48, Q6ZJ38, Q9S7D3

    2. NM_001403368.1 → NP_001390297.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK104303, CI288463
      UniProtKB/Swiss-Prot
      A0A0N7KP69, Q9S827

    3. NM_001403369.1 → NP_001390298.1  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK059815
      UniProtKB/Swiss-Prot
      A0A0N7KP69, Q9S827

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1102382..1105918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9S827.1 GenPept UniProtKB/Swiss-Prot:Q9S827

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