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    Ptgdr prostaglandin D receptor [ Mus musculus (house mouse) ]

    Gene ID: 19214, updated on 2-Nov-2024

    Summary

    Official Symbol
    Ptgdrprovided by MGI
    Official Full Name
    prostaglandin D receptorprovided by MGI
    Primary source
    MGI:MGI:102966
    See related
    Ensembl:ENSMUSG00000071489 AllianceGenome:MGI:102966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    DP; PGD
    Summary
    Enables prostaglandin D receptor activity and prostaglandin J receptor activity. Acts upstream of or within several processes, including adenosine metabolic process; cellular response to prostaglandin D stimulus; and male sex determination. Located in plasma membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and respiratory system. Human ortholog(s) of this gene implicated in asthma. Orthologous to human PTGDR (prostaglandin D2 receptor). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 1.2), CNS E18 (RPKM 0.5) and 14 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ptgdr in Genome Data Viewer
    Location:
    14 C1; 14 22.59 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (45088692..45096832, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (44851235..44859375, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34060 Neighboring gene predicted gene, 41141 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36527 Neighboring gene STARR-seq mESC enhancer starr_36528 Neighboring gene STARR-seq mESC enhancer starr_36529 Neighboring gene predicted gene, 34198 Neighboring gene STARR-seq mESC enhancer starr_36530 Neighboring gene predicted gene, 16976 Neighboring gene crumbs homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_36531 Neighboring gene STARR-seq mESC enhancer starr_36532 Neighboring gene predicted gene, 41142 Neighboring gene microRNA 327

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (7)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables prostaglandin D receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables prostaglandin D receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables prostaglandin D receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables prostaglandin J receptor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    prostaglandin D2 receptor
    Names
    PGD receptor
    PGD2 receptor
    prostanoid DP receptor

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008962.4NP_032988.3  prostaglandin D2 receptor

      See identical proteins and their annotated locations for NP_032988.3

      Status: VALIDATED

      Source sequence(s)
      AK032488, BC132297
      Consensus CDS
      CCDS26971.1
      UniProtKB/Swiss-Prot
      A2RSY4, P70263, Q8CCM3
      Related
      ENSMUSP00000093653.2, ENSMUST00000095959.2
      Conserved Domains (1) summary
      pfam00001
      Location:58318
      7tm_1; 7 transmembrane receptor (rhodopsin family)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      45088692..45096832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)