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    Celf1 CUGBP, Elav-like family member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362160, updated on 2-Nov-2024

    Summary

    Official Symbol
    Celf1provided by RGD
    Official Full Name
    CUGBP, Elav-like family member 1provided by RGD
    Primary source
    RGD:1307721
    See related
    EnsemblRapid:ENSRNOG00000010379 AllianceGenome:RGD:1307721
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cugbp1
    Summary
    Enables mRNA 3'-UTR binding activity. Involved in cellular response to polyamine macromolecule; negative regulation of epithelial cell proliferation; and post-transcriptional regulation of gene expression. Acts upstream of or within positive regulation of gene expression. Predicted to be located in cytoplasmic stress granule and nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human CELF1 (CUGBP Elav-like family member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Spleen (RPKM 191.2), Thymus (RPKM 163.5) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Celf1 in Genome Data Viewer
    Location:
    3q24
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (97380407..97455253)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (76924591..76999429)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (79768900..79844548)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase, mitochondrial 1 Neighboring gene eukaryotic translation elongation factor 1 gamma, pseudogene 17 Neighboring gene receptor-associated protein of the synapse Neighboring gene proteasome 26S subunit, ATPase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables BRE binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables lncRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables lncRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA 3'-UTR binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA 3'-UTR binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables pre-mRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables translation initiation factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cellular response to polyamine macromolecule IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cerebral cortex development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within cerebral cortex development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in mRNA destabilization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in mRNA splice site recognition IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within mRNA splice site recognition ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in mRNA splice site recognition ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of negative regulation of cell population proliferation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of epithelial cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of multicellular organism growth IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within positive regulation of multicellular organism growth ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in post-transcriptional gene silencing IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in post-transcriptional gene silencing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of RNA splicing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of RNA splicing ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in regulation of alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within regulation of alternative mRNA splicing, via spliceosome ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of regulation of cell cycle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in spermatid development IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within spermatid development ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasmic stress granule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in male germ cell nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in male germ cell nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perinucleolar compartment ISO
    Inferred from Sequence Orthology
    more info
     
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    CUGBP Elav-like family member 1
    Names
    CELF-1
    CUG triplet repeat RNA-binding protein 1
    CUG-BP- and ETR-3-like factor 1
    CUG-BP1
    RNA-binding protein BRUNOL-2
    bruno-like protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025421.3NP_001020592.1  CUGBP Elav-like family member 1 isoform e

      See identical proteins and their annotated locations for NP_001020592.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      Q4QQT3
      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Related
      ENSRNOP00000080849.2, ENSRNOT00000106910.2
      Conserved Domains (3) summary
      cd12638
      Location:395486
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    2. NM_001434316.1NP_001421245.1  CUGBP Elav-like family member 1 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    3. NM_001434317.1NP_001421246.1  CUGBP Elav-like family member 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    4. NM_001434318.1NP_001421247.1  CUGBP Elav-like family member 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    5. NM_001434319.1NP_001421248.1  CUGBP Elav-like family member 1 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    6. NM_001434320.1NP_001421249.1  CUGBP Elav-like family member 1 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    7. NM_001434321.1NP_001421250.1  CUGBP Elav-like family member 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    8. NM_001434322.1NP_001421251.1  CUGBP Elav-like family member 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    9. NM_001434323.1NP_001421252.1  CUGBP Elav-like family member 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    10. NM_001434324.1NP_001421253.1  CUGBP Elav-like family member 1 isoform g

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
    11. NM_001434325.1NP_001421254.1  CUGBP Elav-like family member 1 isoform h

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      97380407..97455253
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063284140.1XP_063140210.1  CUGBP Elav-like family member 1 isoform X2

      UniProtKB/TrEMBL
      A6HN95
    2. XM_039105417.2XP_038961345.1  CUGBP Elav-like family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:417508
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    3. XM_039105419.2XP_038961347.1  CUGBP Elav-like family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:417508
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    4. XM_063284144.1XP_063140214.1  CUGBP Elav-like family member 1 isoform X4

    5. XM_039105415.2XP_038961343.1  CUGBP Elav-like family member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51, A6HN95
      Conserved Domains (3) summary
      cd12638
      Location:421512
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    6. XM_039105411.2XP_038961339.1  CUGBP Elav-like family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Related
      ENSRNOP00000094511.2, ENSRNOT00000109347.2
      Conserved Domains (3) summary
      cd12638
      Location:422513
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    7. XM_039105414.2XP_038961342.1  CUGBP Elav-like family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:422513
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    8. XM_039105416.2XP_038961344.1  CUGBP Elav-like family member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:418509
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    9. XM_063284142.1XP_063140212.1  CUGBP Elav-like family member 1 isoform X3

      Related
      ENSRNOP00000014484.7, ENSRNOT00000014484.9
    10. XM_063284141.1XP_063140211.1  CUGBP Elav-like family member 1 isoform X3

    11. XM_039105420.2XP_038961348.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/Swiss-Prot
      Q4QQT3
      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:395486
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    12. XM_063284146.1XP_063140216.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/Swiss-Prot
      Q4QQT3
    13. XM_039105412.2XP_038961340.1  CUGBP Elav-like family member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:422513
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    14. XM_039105423.2XP_038961351.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/Swiss-Prot
      Q4QQT3
      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:395486
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    15. XM_063284145.1XP_063140215.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/Swiss-Prot
      Q4QQT3
    16. XM_063284149.1XP_063140219.1  CUGBP Elav-like family member 1 isoform X7

      UniProtKB/TrEMBL
      A0A8L2Q6U8
    17. XM_039105422.2XP_038961350.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/Swiss-Prot
      Q4QQT3
      UniProtKB/TrEMBL
      A0A8I5ZTX3, A0A8I6AL51
      Conserved Domains (3) summary
      cd12638
      Location:395486
      RRM3_CELF1_2; RNA recognition motif 3 (RRM3) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    18. XM_063284147.1XP_063140217.1  CUGBP Elav-like family member 1 isoform X6

      UniProtKB/TrEMBL
      A6HN97
      Related
      ENSRNOP00000111254.1, ENSRNOT00000151133.1