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    4930519F16Rik RIKEN cDNA 4930519F16 gene [ Mus musculus (house mouse) ]

    Gene ID: 75106, updated on 22-Oct-2024

    Summary

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    Official Symbol
    4930519F16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930519F16 geneprovided by MGI
    Primary source
    MGI:MGI:1922356
    See related
    Ensembl:ENSMUSG00000121861 AllianceGenome:MGI:1922356
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ppnx
    Expression
    Restricted expression toward testis adult (RPKM 1.7) See more
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    Genomic context

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    See 4930519F16Rik in Genome Data Viewer
    Location:
    X D; X 45.97 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (102226584..102300238, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (103182978..103256632, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene tubulin, alpha 4A pseudogene Neighboring gene STARR-seq mESC enhancer starr_47682 Neighboring gene ring finger and WD repeat domain 2 (Rfwd2) pseudogene Neighboring gene nucleosome assembly protein 1-like 2 Neighboring gene predicted gene 9050 Neighboring gene ribosomal protein L18A pseudogene Neighboring gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47686 Neighboring gene caudal type homeobox 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine. Chureau C, et al. Genome Res, 2002 Jun. PMID 12045143, Free PMC Article
    2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    4. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
    5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC75106
    Names
    novel gene likely coding for a serine proteases, trypsin family/Chymotrypsin serine protease family (S1) containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001358270.2 → NP_001345199.1  uncharacterized protein LOC75106 isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL772378, AL773526
      UniProtKB/TrEMBL
      Q8K3S0, Q9D533
      Related
      ENSMUST00000033688.13
      Conserved Domains (1) summary
      cl21584
      Location:47 → 251
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    2. NM_001382418.1 → NP_001369347.1  uncharacterized protein LOC75106 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AL772378
      UniProtKB/TrEMBL
      Q8K3S2, Q8K3S3
      Related
      ENSMUST00000249846.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      102226584..102300238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247688.2 → XP_011245990.1  uncharacterized protein LOC75106 isoform X1

      See identical proteins and their annotated locations for XP_011245990.1

      UniProtKB/TrEMBL
      Q8K3S1
      Conserved Domains (1) summary
      cl21584
      Location:47 → 251
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_029170.1: Suppressed sequence

      Description
      NM_029170.1: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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