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    Krtap9-20 keratin associated protein 9-20 [ Mus musculus (house mouse) ]

    Gene ID: 100415785, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Krtap9-20provided by MGI
    Official Full Name
    keratin associated protein 9-20provided by MGI
    Primary source
    MGI:MGI:3652067
    See related
    Ensembl:ENSMUSG00000090225 AllianceGenome:MGI:3652067
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm11559
    Summary
    Predicted to enable identical protein binding activity. Orthologous to several human genes including KRTAP9-2 (keratin associated protein 9-2); KRTAP9-3 (keratin associated protein 9-3); and KRTAP9-4 (keratin associated protein 9-4). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Krtap9-20 in Genome Data Viewer
    Location:
    11 D; 11 63.21 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (99755302..99756397)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (99864476..99865571)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26324 Neighboring gene keratin associated protein 9-21 Neighboring gene keratin associated protein 9-1 Neighboring gene keratin associated protein 9-22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    novel member of the keratin associated protein 9 (Krtap9) family

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177484.2 → NP_001170955.1  novel member of the keratin associated protein 9 (Krtap9) family

      See identical proteins and their annotated locations for NP_001170955.1

      Status: VALIDATED

      Source sequence(s)
      AK017437, AL590992
      Consensus CDS
      CCDS48923.1
      UniProtKB/TrEMBL
      Q9D3H7
      Related
      ENSMUSP00000090367.4, ENSMUST00000092694.4
      Conserved Domains (2) summary
      pfam01500
      Location:62 → 151
      Keratin_B2; Keratin, high sulfur B2 protein
      pfam13885
      Location:118 → 154
      Keratin_B2_2; Keratin, high sulfur B2 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      99755302..99756397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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