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    Krtap16-3 keratin associated protein 16-3 [ Mus musculus (house mouse) ]

    Gene ID: 71369, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Krtap16-3provided by MGI
    Official Full Name
    keratin associated protein 16-3provided by MGI
    Primary source
    MGI:MGI:1918619
    See related
    Ensembl:ENSMUSG00000096534 AllianceGenome:MGI:1918619
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Krtap16-10; 5430404J20Rik
    Summary
    Predicted to be located in intermediate filament. Orthologous to human KRTAP19-8 (keratin associated protein 19-8). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Krtap16-3 in Genome Data Viewer
    Location:
    16 C3.3; 16 51.42 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (88759192..88759761, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (88962304..88962873, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene keratin associated protein 19-5 Neighboring gene keratin associated protein 19-9B Neighboring gene predicted gene, 41515 Neighboring gene keratin associated protein 22-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of Hoxc13 in differentiating keratinocytes results in downregulation of a novel hair keratin gene cluster and alopecia. Tkatchenko AV, et al. Development, 2001 May. PMID 11290294
    2. Krtap16, characterization of a new hair keratin-associated protein (KAP) gene complex on mouse chromosome 16 and evidence for regulation by Hoxc13. Pruett ND, et al. J Biol Chem, 2004 Dec 3. PMID 15385554
    3. Transcriptome and phenotypic analysis reveals Gata3-dependent signalling pathways in murine hair follicles. Kurek D, et al. Development, 2007 Jan. PMID 17151017
    4. Molecular evolution of the keratin associated protein gene family in mammals, role in the evolution of mammalian hair. Wu DD, et al. BMC Evol Biol, 2008 Aug 23. PMID 18721477, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Krtap16 is a hair keratin-associated protein gene complex regulated by Hoxc13; localized to chromosome 16
      Title: Krtap16, characterization of a new hair keratin-associated protein (KAP) gene complex on mouse chromosome 16 and evidence for regulation by Hoxc13.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    keratin-associated protein 16-3
    Names
    keratin-associated protein 16.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183296.1 → NP_899119.1  keratin-associated protein 16-3

      See identical proteins and their annotated locations for NP_899119.1

      Status: PROVISIONAL

      Source sequence(s)
      AK017265
      Consensus CDS
      CCDS79478.1
      UniProtKB/Swiss-Prot
      Q3B7Z5, Q8C1I6, Q925H8
      Related
      ENSMUSP00000139557.2, ENSMUST00000179707.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      88759192..88759761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_130872.3: Suppressed sequence

      Description
      NM_130872.3: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8C1I6.1 GenPept UniProtKB/Swiss-Prot:Q8C1I6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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