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    LINC01808 long intergenic non-protein coding RNA 1808 [ Homo sapiens (human) ]

    Gene ID: 105373460, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01808provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1808provided by HGNC
    Primary source
    HGNC:HGNC:52611
    See related
    Ensembl:ENSG00000237992 AllianceGenome:HGNC:52611
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01808 in Genome Data Viewer
    Location:
    2p24.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (19468929..19521203)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (19501721..19554129)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (19668690..19720964)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15364 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19555132-19556097 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:19556098-19557062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19557728-19558256 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:19563065-19563866 Neighboring gene Sharpr-MPRA regulatory region 3817 Neighboring gene microRNA 4757 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19580130-19581329 Neighboring gene odd-skipped related transcription factor 1 Neighboring gene uncharacterized LOC105373458 Neighboring gene uncharacterized LOC101928196 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:19687399-19688598 Neighboring gene VISTA enhancer hs1273 Neighboring gene uncharacterized LOC105373459 Neighboring gene uncharacterized LOC124905977 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:19853789-19854988

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    General gene information

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    Clone Names

    • AC010096.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183418.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010096

    2. NR_183419.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010096
      Related
      ENST00000450628.2

    3. NR_183420.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010096

    4. NR_183421.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010096

    5. NR_183422.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010096
      Related
      ENST00000654520.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      19468929..19521203
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      19501721..19554129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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