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    LINC00895 long intergenic non-protein coding RNA 895 [ Homo sapiens (human) ]

    Gene ID: 150185, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00895provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 895provided by HGNC
    Primary source
    HGNC:HGNC:48580
    See related
    AllianceGenome:HGNC:48580
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LINC00895 in Genome Data Viewer
    Location:
    22q11.21
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (19566130..19566839, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (19942968..19943677, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (19553653..19554362, complement)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13463 Neighboring gene cell division cycle 45 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19486137-19486353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19493394-19493894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19493895-19494395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19502006-19502506 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19502507-19503007 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19509616-19510548 Neighboring gene MPRA-validated peak4453 silencer Neighboring gene claudin 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19531837-19532336 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19542168-19542870 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19542871-19543573 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19554961-19555296 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19583904-19584446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19585482-19585982 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19585983-19586483 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19592881-19593448 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:19593449-19594016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19594499-19595072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19604675-19605254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19605255-19605833 Neighboring gene Sharpr-MPRA regulatory region 15144 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:19607854-19608615 Neighboring gene CRISPRi-validated cis-regulatory element chr22.250 Neighboring gene chromosome 3 open reading frame 38 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr22:19640940-19641163 Neighboring gene uncharacterized LOC100420103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ32869, MGC126199, MGC126200, MGC126201, MGC126202

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024381.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK057431, BC104250

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      19566130..19566839 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      19942968..19943677 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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