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    XKR4-AS1 XKR4 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 105375843, updated on 28-Oct-2024

    Summary

    Official Symbol
    XKR4-AS1provided by HGNC
    Official Full Name
    XKR4 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:56156
    See related
    Ensembl:ENSG00000254357 AllianceGenome:HGNC:56156
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.2) See more
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    Genomic context

    See XKR4-AS1 in Genome Data Viewer
    Location:
    8q12.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (55517187..55520978, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (55894461..55898256, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (56429746..56433537, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375844 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56082878-56083063 Neighboring gene XK related 4 Neighboring gene Sharpr-MPRA regulatory region 131 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:56170973-56172172 Neighboring gene NANOG hESC enhancer GRCh37_chr8:56226088-56226589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56276417-56277111 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56277806-56278500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:56280453-56280954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285036-56285662 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:56285663-56286288 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:56366282-56366665 Neighboring gene SET binding factor 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27373 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27374 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27375 Neighboring gene uncharacterized LOC105375845 Neighboring gene uncharacterized LOC105375846

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134323.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA412543, AI018803, CR738863
      Related
      ENST00000522918.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      55517187..55520978 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      55894461..55898256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)