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    JARID2-AS1 JARID2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506681, updated on 17-Sep-2024

    Summary

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    Official Symbol
    JARID2-AS1provided by HGNC
    Official Full Name
    JARID2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40314
    See related
    Ensembl:ENSG00000235488 AllianceGenome:HGNC:40314
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.5) and bone marrow (RPKM 0.7) See more
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    Genomic context

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    See JARID2-AS1 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (15247815..15248696, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (15121011..15121892, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (15248046..15248927, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374946 Neighboring gene MPRA-validated peak5677 silencer Neighboring gene MPRA-validated peak5678 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15203770-15204322 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15207084-15207636 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:15212336-15212500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15239058-15239558 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15239559-15240059 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15244415-15244928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16946 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24064 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24065 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16949 Neighboring gene nonconserved acetylation island sequence 83 enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15251871-15252646 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24066 Neighboring gene JARID2 divergent transcript Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:15264949-15265458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24067 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15267598-15268156 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15268157-15268714 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:15268715-15269273 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:15269274-15269831 Neighboring gene jumonji and AT-rich interaction domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15280804-15281784 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24069 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15291865-15292366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24071 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16950 Neighboring gene Sharpr-MPRA regulatory region 4383 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24074 Neighboring gene RNA, U6 small nuclear 522, pseudogene Neighboring gene RNA, U6 small nuclear 645, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Autoregulation of JARID2 through PRC2 interaction with its antisense ncRNA. Al-Raawi D, et al. BMC Res Notes, 2020 Oct 30. PMID 33126912, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Autoregulation of JARID2 through PRC2 interaction with its antisense ncRNA.
      Title: Autoregulation of JARID2 through PRC2 interaction with its antisense ncRNA.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • JARID2 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120502.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI218808, BC033996, HY051522
      Related
      ENST00000441978.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      15247815..15248696 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      15121011..15121892 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials