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    Ccdc187 coiled-coil domain containing 187 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499759, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Ccdc187provided by RGD
    Official Full Name
    coiled-coil domain containing 187provided by RGD
    Primary source
    RGD:1565512
    See related
    EnsemblRapid:ENSRNOG00000027392 AllianceGenome:RGD:1565512
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565512
    Summary
    Predicted to enable microtubule binding activity. Predicted to be involved in microtubule anchoring. Predicted to be located in centrosome. Orthologous to human CCDC187 (coiled-coil domain containing 187). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 71.8), Lung (RPKM 60.2) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    3p13
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (29468292..29525002, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (9070192..9127001, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (3724656..3747440, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox 3 Neighboring gene quiescin sulfhydryl oxidase 2 Neighboring gene uncharacterized LOC120101510 Neighboring gene G-protein signaling modulator 1 Neighboring gene caspase recruitment domain family, member 9 Neighboring gene DNL-type zinc finger

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in microtubule anchoring IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 187

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      29468292..29525002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039106127.2 → XP_038962055.1  coiled-coil domain-containing protein 187 isoform X3

      UniProtKB/TrEMBL
      A0A8I6GIU0

    2. XM_039106125.2 → XP_038962053.1  coiled-coil domain-containing protein 187 isoform X3

      UniProtKB/TrEMBL
      A0A8I6GIU0

    3. XM_039106126.2 → XP_038962054.1  coiled-coil domain-containing protein 187 isoform X3

      UniProtKB/TrEMBL
      A0A8I6GIU0
      Related
      ENSRNOP00000091202.1, ENSRNOT00000105690.2

    4. XM_063285235.1 → XP_063141305.1  coiled-coil domain-containing protein 187 isoform X3

      UniProtKB/TrEMBL
      A0A8I6GIU0
      Related
      ENSRNOP00000086756.1, ENSRNOT00000117358.2

    5. XM_039106122.2 → XP_038962050.1  coiled-coil domain-containing protein 187 isoform X2

      UniProtKB/TrEMBL
      A0A8I6GIU0

    6. XM_039106121.2 → XP_038962049.1  coiled-coil domain-containing protein 187 isoform X1

      UniProtKB/TrEMBL
      A0A8I6GIU0

    7. XM_063285236.1 → XP_063141306.1  coiled-coil domain-containing protein 187 isoform X4

    8. XM_063285237.1 → XP_063141307.1  coiled-coil domain-containing protein 187 isoform X5

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001134617.1: Suppressed sequence

      Description
      NM_001134617.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CCDC187 (GeneID:399693).
    Nucleotide Protein Strain
    Heading Accession and Version

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