ptpdc1b protein tyrosine phosphatase domain containing 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: ptpdc1bprovided by ZNC
Official Full Name: protein tyrosine phosphatase domain containing 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-090312-138
See related: Ensembl:ENSDARG00000058873 AllianceGenome:ZFIN:ZDB-GENE-090312-138
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch73-142c19.2
Summary: Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in cilium assembly. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm. Orthologous to human PTPDC1 (protein tyrosine phosphatase domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	23	NC_007134.7 (4373260..4390316)
105	previous assembly	GRCz10 (GCF_000002035.5)	23	NC_007134.6 (4434333..4453200)

Chromosome 23 - NC_007134.7 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Submit: New GeneRIF Correction

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables phosphoprotein phosphatase activity	IEA Inferred from Electronic Annotation more info
enables protein tyrosine phosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables protein tyrosine phosphatase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cilium assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cilium assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within dephosphorylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within protein dephosphorylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

Preferred Names: protein tyrosine phosphatase domain-containing protein 1-like

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The following sections contain reference sequences that belong to a specific genome build. Explain

XM_017353746.3 → XP_017209235.1 protein tyrosine phosphatase domain-containing protein 1-like isoform X3

UniProtKB/TrEMBL

A0A8M6YXZ1
XM_009296601.4 → XP_009294876.1 protein tyrosine phosphatase domain-containing protein 1-like isoform X2

UniProtKB/TrEMBL

A0A8M3AY38

Conserved Domains (1) summary

smart00404
Location:136 → 210

PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
XM_694462.9 → XP_699554.4 protein tyrosine phosphatase domain-containing protein 1-like isoform X1

UniProtKB/TrEMBL

A0A8N7TFS7, E7FBM8

Related

ENSDARP00000122255.1, ENSDART00000144061.3

Conserved Domains (1) summary

smart00404
Location:136 → 210

PTPc_motif; Protein tyrosine phosphatase, catalytic domain motif
XM_017353747.3 → XP_017209236.1 protein tyrosine phosphatase domain-containing protein 1-like isoform X4

UniProtKB/TrEMBL

A0A8M6Z4L9