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    CNTNAP2-AS1 CNTNAP2 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101928700, updated on 17-Sep-2024

    Summary

    Official Symbol
    CNTNAP2-AS1provided by HGNC
    Official Full Name
    CNTNAP2 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40657
    See related
    Ensembl:ENSG00000236795 AllianceGenome:HGNC:40657
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See CNTNAP2-AS1 in Genome Data Viewer
    Location:
    7q35
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (147080938..147097609, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (148261287..148277926, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (146778030..146794701, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901765 Neighboring gene MPRA-validated peak6822 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr7:145629475-145629976 Neighboring gene NANOG hESC enhancer GRCh37_chr7:145694161-145694662 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:145715805-145716394 Neighboring gene MPRA-validated peak6823 silencer Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:145750296-145751495 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:145858210-145858754 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:145945721-145946492 Neighboring gene contactin associated protein 2 Neighboring gene transmembrane protein 183A pseudogene Neighboring gene MPRA-validated peak6825 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:146485317-146485842 Neighboring gene Sharpr-MPRA regulatory region 553 Neighboring gene NANOG hESC enhancer GRCh37_chr7:146572321-146572837 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:146602536-146603152 Neighboring gene deoxyuridine triphosphatase pseudogene 3 Neighboring gene RAN pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110829.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006004, BC026117
      Related
      ENST00000434887.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      147080938..147097609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      148261287..148277926 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)