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    LINC00029 long intergenic non-protein coding RNA 29 [ Homo sapiens (human) ]

    Gene ID: 100144596, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00029provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 29provided by HGNC
    Primary source
    HGNC:HGNC:16184
    See related
    AllianceGenome:HGNC:16184
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf51; NCRNA00029
    Expression
    Restricted expression toward testis (RPKM 2.7) See more
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    Genomic context

    See LINC00029 in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (63034217..63037028, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64835829..64838604, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61665569..61668380, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61638035-61638740 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61638741-61639448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18221 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13142 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13143 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18222 Neighboring gene basic helix-loop-helix family member e23 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18223 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61648125-61649092 Neighboring gene uncharacterized LOC105372718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13144 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61659968-61660519 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61663990-61664714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61665438-61666162 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61666163-61666886 Neighboring gene long intergenic non-protein coding RNA 1056 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:61687794-61687994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61690954-61691796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61691797-61692638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61699516-61700022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61700597-61701098 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61701099-61701598 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18224 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13145 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61704121-61704620 Neighboring gene long intergenic non-protein coding RNA 1749

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028295.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AA609342, AL117533, AL121673, BC069708, BC134343

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      63034217..63037028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      64835829..64838604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_022099.3: Suppressed sequence

      Description
      NM_022099.3: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.