U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    wbp1la WW domain binding protein 1-like a [ Danio rerio (zebrafish) ]

    Gene ID: 555492, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    wbp1laprovided by ZNC
    Official Full Name
    WW domain binding protein 1-like aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1961
    See related
    Ensembl:ENSDARG00000013245 AllianceGenome:ZFIN:ZDB-GENE-030131-1961
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb93b04; wu:fb93b04; zgc:136955; si:ch211-67n3.1
    Summary
    Predicted to be involved in CXCL12-activated CXCR4 signaling pathway. Predicted to be located in membrane. Orthologous to human WBP1L (WW domain binding protein 1 like). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See wbp1la in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (28580331..28600338)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (28449944..28468165)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 8a Neighboring gene F-box and WD repeat domain containing 4 Neighboring gene uncharacterized LOC137487409 Neighboring gene cytochrome P450, family 17, subfamily A, polypeptide 1 Neighboring gene BLOC-1 related complex subunit 7

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of p53-target genes in Danio rerio. Mandriani B, et al. Sci Rep, 2016 Sep 1. PMID 27581768, Free PMC Article
    2. Evolution of developmental regulation in the vertebrate FgfD subfamily. Jovelin R, et al. J Exp Zool B Mol Dev Evol, 2010 Jan 15. PMID 19562753, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in CXCL12-activated CXCR4 signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    WW domain binding protein 1-like a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044333.2 → NP_001037798.2  WW domain binding protein 1-like a

      Status: VALIDATED

      Source sequence(s)
      AL928951
      Related
      ENSDARP00000009087.7, ENSDART00000007211.8

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      28580331..28600338
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480585.2 → XP_021336260.1  WW domain binding protein 1-like a isoform X1

      UniProtKB/TrEMBL
      A0A8M9QNE4, Q1ECU4
      Conserved Domains (2) summary
      pfam11669
      Location:22 → 123
      WBP-1; WW domain-binding protein 1
      pfam15694
      Location:123 → 235
      Med26_M; Mediator complex subunit 26 middle domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools