tmub1 transmembrane and ubiquitin-like domain containing 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: tmub1provided by ZNC
Official Full Name: transmembrane and ubiquitin-like domain containing 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-2504
See related: Ensembl:ENSDARG00000038787 AllianceGenome:ZFIN:ZDB-GENE-040426-2504
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:77146; wu:fa98b10
Summary: Predicted to be involved in ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (32561180..32574925, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (32577962..32591707, complement)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in ERAD pathway	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within ERAD pathway	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transmembrane and ubiquitin-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213298.2 → NP_998463.1 transmembrane and ubiquitin-like domain-containing protein 1

See identical proteins and their annotated locations for NP_998463.1

Status: VALIDATED

Source sequence(s)

BX323804, EH541175

UniProtKB/Swiss-Prot

Q6P135

Related

ENSDARP00000056641.3, ENSDART00000056642.4

Conserved Domains (2) summary

smart00213
Location:151 → 218

UBQ; Ubiquitin homologues

pfam00240
Location:154 → 219

ubiquitin; Ubiquitin family