U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PRMT2 protein arginine methyltransferase 2 [ Homo sapiens (human) ]

    Gene ID: 3275, updated on 2-May-2024

    Summary

    Official Symbol
    PRMT2provided by HGNC
    Official Full Name
    protein arginine methyltransferase 2provided by HGNC
    Primary source
    HGNC:HGNC:5186
    See related
    Ensembl:ENSG00000160310 MIM:601961; AllianceGenome:HGNC:5186
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HRMT1L1
    Summary
    Enables several functions, including nuclear receptor binding activity; peroxisome proliferator activated receptor binding activity; and protein homodimerization activity. Involved in several processes, including histone methylation; regulation of androgen receptor signaling pathway; and regulation of transcription, DNA-templated. Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in ovary (RPKM 11.6), spleen (RPKM 8.9) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PRMT2 in Genome Data Viewer
    Location:
    21q22.3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (46635674..46665124)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (45021936..45051495)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (48055586..48085036)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene disco interacting protein 2 homolog A Neighboring gene RNA, U6 small nuclear 396, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:48026033-48026534 Neighboring gene S100 calcium binding protein B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:48044299-48044799 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:48054684-48055354 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:48061114-48061614 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18607 Neighboring gene uncharacterized LOC124905058 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:48087547-48088284 Neighboring gene DSTN pseudogene 1 Neighboring gene MPRA-validated peak4433 silencer Neighboring gene ribosomal protein L23a pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC111373

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables histone H3 methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables histone H3R8 methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables histone methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables histone methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nuclear androgen receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear estrogen receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables nuclear estrogen receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear progesterone receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear retinoic acid receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nuclear thyroid hormone receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables peroxisome proliferator activated receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein-arginine N-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables protein-arginine N-methyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein-arginine omega-N asymmetric methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein-containing complex binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein arginine N-methyltransferase 2
    Names
    HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1
    HMT1 hnRNP methyltransferase-like 1
    PRMT2 alpha
    PRMT2 beta
    PRMT2 gamma
    histone-arginine N-methyltransferase PRMT2
    NP_001229793.1
    NP_001229794.1
    NP_001229795.1
    NP_001273605.1
    NP_001273606.1
    NP_001273607.1
    NP_001526.2
    NP_996845.1
    XP_005261168.1
    XP_006724061.1
    XP_006724062.1
    XP_006724063.1
    XP_047296715.1
    XP_047296716.1
    XP_047296717.1
    XP_054180436.1
    XP_054180437.1
    XP_054180438.1
    XP_054180439.1
    XP_054180440.1
    XP_054180441.1
    XP_054180442.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001242864.3NP_001229793.1  protein arginine N-methyltransferase 2 isoform 2

      See identical proteins and their annotated locations for NP_001229793.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and lacks 2 consecutive exons in the 3' coding region compared to variant 1. However, it maintains the reading frame and encodes a shorter isoform (2) lacking an internal protein segment compared to isoform 1.
      Source sequence(s)
      AK123650, BC100026, BQ267811, DA169949
      Consensus CDS
      CCDS56220.1
      UniProtKB/Swiss-Prot
      P55345
      Related
      ENSP00000397266.1, ENST00000440086.5
      Conserved Domains (3) summary
      cd02440
      Location:141221
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    2. NM_001242865.3NP_001229794.1  protein arginine N-methyltransferase 2 isoform 3

      See identical proteins and their annotated locations for NP_001229794.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR and has an alternate 3' terminal exon that causes a frame-shift compared to variant 1. The resulting shorter isoform (3) has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK123650, AP000339, DA169949, DA517312, DA708321, DB160043, U79286
      Consensus CDS
      CCDS56219.1
      UniProtKB/Swiss-Prot
      P55345
      Related
      ENSP00000335490.4, ENST00000334494.8
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:138210
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    3. NM_001242866.3NP_001229795.1  protein arginine N-methyltransferase 2 isoform 4

      See identical proteins and their annotated locations for NP_001229795.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR and has an alternate 3' terminal exon compared to variant 1. The resulting isoform (4) has a shorter C-terminus compared to isoform 1.
      Source sequence(s)
      AY786414, BM976817, BY799824, CA427786, CB045875, DA169949
      UniProtKB/TrEMBL
      A0A0S2Z3W8
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:112242
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    4. NM_001286676.2NP_001273605.1  protein arginine N-methyltransferase 2 isoform 5

      See identical proteins and their annotated locations for NP_001273605.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) differs in the 5' UTR and lacks 3 consecutive exons in the 3' coding region that causes a frame-shift compared to variant 1. The resulting shorter isoform (5) has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK123650, AY786414, BQ267811, DA169949, FJ436411
      Consensus CDS
      CCDS68231.1
      UniProtKB/Swiss-Prot
      P55345
      Related
      ENSP00000407463.2, ENST00000458387.6
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:138220
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    5. NM_001286677.2NP_001273606.1  protein arginine N-methyltransferase 2 isoform 6

      See identical proteins and their annotated locations for NP_001273606.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (7) differs in the 5' UTR and lacks 3 consecutive exons in the 3' coding region that causes a frame-shift compared to variant 1. The resulting shorter isoform (6) has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK123650, AY786414, BQ267811, DA169949
      Consensus CDS
      CCDS68230.1
      UniProtKB/TrEMBL
      A0A0S2Z3W8
      Related
      ENSP00000411984.2, ENST00000451211.6
      Conserved Domains (3) summary
      cd02440
      Location:141241
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    6. NM_001286678.2NP_001273607.1  protein arginine N-methyltransferase 2 isoform 7

      See identical proteins and their annotated locations for NP_001273607.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (8) differs in the 5' UTR and lacks 4 consecutive exons in the 3' coding region compared to variant 1. However, it maintains the reading frame and encodes a shorter isoform (7) lacking an internal protein segment compared to isoform 1.
      Source sequence(s)
      AK123650, AY786414, BQ267811, DA169949
      Consensus CDS
      CCDS74806.1
      UniProtKB/TrEMBL
      A8MXR3
      Related
      ENSP00000291705.6, ENST00000291705.11
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:112223
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    7. NM_001535.5NP_001526.2  protein arginine N-methyltransferase 2 isoform 1

      See identical proteins and their annotated locations for NP_001526.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (1).
      Source sequence(s)
      AK123650, BQ267811, DA169949, X99209
      Consensus CDS
      CCDS13737.1
      UniProtKB/Swiss-Prot
      B7U630, B7U631, B7U632, P55345, P78350, Q498Y5, Q5U7D4, Q6FHF0, Q99781, Q9BW15, Q9UMC2
      UniProtKB/TrEMBL
      A0A0S2Z3N3, Q53FX4
      Related
      ENSP00000380760.2, ENST00000397638.6
      Conserved Domains (3) summary
      cd02440
      Location:141241
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    8. NM_206962.4NP_996845.1  protein arginine N-methyltransferase 2 isoform 1

      See identical proteins and their annotated locations for NP_996845.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 and 2 encode the same isoform.
      Source sequence(s)
      AK123650, BC000727, BQ267811, DA169949
      Consensus CDS
      CCDS13737.1
      UniProtKB/Swiss-Prot
      B7U630, B7U631, B7U632, P55345, P78350, Q498Y5, Q5U7D4, Q6FHF0, Q99781, Q9BW15, Q9UMC2
      UniProtKB/TrEMBL
      A0A0S2Z3N3, Q53FX4
      Related
      ENSP00000347906.3, ENST00000355680.8
      Conserved Domains (3) summary
      cd02440
      Location:141241
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      46635674..46665124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006723998.5XP_006724061.1  protein arginine N-methyltransferase 2 isoform X2

      See identical proteins and their annotated locations for XP_006724061.1

      UniProtKB/Swiss-Prot
      P55345
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:138220
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    2. XM_006724000.4XP_006724063.1  protein arginine N-methyltransferase 2 isoform X4

      See identical proteins and their annotated locations for XP_006724063.1

      UniProtKB/TrEMBL
      A8MXR3
      Conserved Domains (2) summary
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:112223
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    3. XM_005261111.5XP_005261168.1  protein arginine N-methyltransferase 2 isoform X1

      See identical proteins and their annotated locations for XP_005261168.1

      UniProtKB/Swiss-Prot
      B7U630, B7U631, B7U632, P55345, P78350, Q498Y5, Q5U7D4, Q6FHF0, Q99781, Q9BW15, Q9UMC2
      UniProtKB/TrEMBL
      A0A0S2Z3N3, Q53FX4
      Conserved Domains (3) summary
      cd02440
      Location:141241
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    4. XM_047440759.1XP_047296715.1  protein arginine N-methyltransferase 2 isoform X2

    5. XM_006723999.4XP_006724062.1  protein arginine N-methyltransferase 2 isoform X3

      Conserved Domains (3) summary
      cd02440
      Location:141222
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
      cd11806
      Location:3486
      SH3_PRMT2; Src homology 3 domain of Protein arginine N-methyltransferase 2
      cl17173
      Location:110169
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    6. XM_047440761.1XP_047296717.1  protein arginine N-methyltransferase 2 isoform X3

    7. XM_047440760.1XP_047296716.1  protein arginine N-methyltransferase 2 isoform X3

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      45021936..45051495
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054324462.1XP_054180437.1  protein arginine N-methyltransferase 2 isoform X2

    2. XM_054324467.1XP_054180442.1  protein arginine N-methyltransferase 2 isoform X4

    3. XM_054324461.1XP_054180436.1  protein arginine N-methyltransferase 2 isoform X1

      UniProtKB/Swiss-Prot
      B7U630, B7U631, B7U632, P55345, P78350, Q498Y5, Q5U7D4, Q6FHF0, Q99781, Q9BW15, Q9UMC2
      UniProtKB/TrEMBL
      A0A0S2Z3N3
    4. XM_054324463.1XP_054180438.1  protein arginine N-methyltransferase 2 isoform X2

    5. XM_054324464.1XP_054180439.1  protein arginine N-methyltransferase 2 isoform X3

    6. XM_054324466.1XP_054180441.1  protein arginine N-methyltransferase 2 isoform X3

    7. XM_054324465.1XP_054180440.1  protein arginine N-methyltransferase 2 isoform X3