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    DUBR DPPA2 upstream binding RNA [ Homo sapiens (human) ]

    Gene ID: 344595, updated on 2-Nov-2024

    Summary

    Official Symbol
    DUBRprovided by HGNC
    Official Full Name
    DPPA2 upstream binding RNAprovided by HGNC
    Primary source
    HGNC:HGNC:48569
    See related
    Ensembl:ENSG00000243701 MIM:616619; AllianceGenome:HGNC:48569
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    DUM; LINC0883; LINC00883
    Summary
    Predicted to act upstream of or within negative regulation of gene expression via chromosomal CpG island methylation; negative regulation of transcription by RNA polymerase II; and positive regulation of myoblast differentiation. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in ovary (RPKM 6.4), testis (RPKM 4.8) and 22 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See DUBR in Genome Data Viewer
    Location:
    3q13.12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (107240692..107326964)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (109960376..110046666)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (106959539..107045811)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene PTPN11 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 882 Neighboring gene NANOG hESC enhancer GRCh37_chr3:106861597-106862136 Neighboring gene uncharacterized LOC124909404 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14585 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107003277-107004086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:107004087-107004896 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:107027390-107028318 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:107034942-107035442 Neighboring gene CS pseudogene 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:107085622-107086821 Neighboring gene coiled-coil domain containing 54

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 883

    Clone Names

    • FLJ31372

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028301.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC074043, BC039550, BU618315, DA339707
      Related
      ENST00000466734.6
    2. NR_028302.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses the same first exon as variant 1, but has a distinct 3' splice pattern.
      Source sequence(s)
      AC063944, AK309100
      Related
      ENST00000490441.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      107240692..107326964
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      109960376..110046666
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)