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    LINC01484 long intergenic non-protein coding RNA 1484 [ Homo sapiens (human) ]

    Gene ID: 101928136, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01484provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1484provided by HGNC
    Primary source
    HGNC:HGNC:51136
    See related
    Ensembl:ENSG00000253686 AllianceGenome:HGNC:51136
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in fat (RPKM 3.5), adrenal (RPKM 0.7) and 5 other tissues See more
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    Genomic context

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    See LINC01484 in Genome Data Viewer
    Location:
    5q35.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (173707599..173746209, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (174247726..174286375, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173134602..173173212, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1863 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:173097006-173097602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23659 Neighboring gene long intergenic non-protein coding RNA 1942 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173134228-173134728 Neighboring gene uncharacterized LOC107984118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173147588-173148088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173148089-173148589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23663 Neighboring gene uncharacterized LOC124901138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173198292-173199282 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:173204773-173205972 Neighboring gene uncharacterized LOC107986482 Neighboring gene NFE2L2 motif-containing MPRA enhancer 276 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23666 Neighboring gene long intergenic non-protein coding RNA 1485

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • CTB-43E15.3

    Clone Names

    • FLJ90337

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_108027.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008674, DA145520, DB312919
      Related
      ENST00000517733.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      173707599..173746209 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      174247726..174286375 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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