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    Iqcf3 IQ motif containing F3 [ Mus musculus (house mouse) ]

    Gene ID: 68265, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Iqcf3provided by MGI
    Official Full Name
    IQ motif containing F3provided by MGI
    Primary source
    MGI:MGI:1915515
    See related
    Ensembl:ENSMUSG00001074846 AllianceGenome:MGI:1915515
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700012F17Rik
    Expression
    Restricted expression toward testis adult (RPKM 95.0) See more
    Orthologs
    human all
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    Genomic context

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    See Iqcf3 in Genome Data Viewer
    Location:
    9 F1; 9 57.74 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (106420588..106438825, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (106504665..106561646, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene IQ motif containing F1 Neighboring gene IQ motif containing F5 Neighboring gene STARR-positive B cell enhancer mm9_chr9:106434062-106434362 Neighboring gene IQ motif containing F2 Neighboring gene STARR-seq mESC enhancer starr_25155 Neighboring gene IQ motif containing F4 Neighboring gene predicted gene, 39420

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    IQ domain-containing protein F3
    Names
    testis-specific IQ motif containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001368648.1 → NP_001355577.1  IQ domain-containing protein F3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      AC152452

    2. NM_026645.3 → NP_080921.2  IQ domain-containing protein F3 isoform 2

      See identical proteins and their annotated locations for NP_080921.2

      Status: VALIDATED

      Source sequence(s)
      BC049549
      Consensus CDS
      CCDS40758.1
      UniProtKB/Swiss-Prot
      Q9D498
      UniProtKB/TrEMBL
      A0A7N9VS70
      Related
      ENSMUSP00001068197.1, ENSMUST00010126032.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      106420588..106438825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D498.1 GenPept UniProtKB/Swiss-Prot:Q9D498

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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