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    Gm15056 predicted gene 15056 [ Mus musculus (house mouse) ]

    Gene ID: 100504014, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm15056provided by MGI
    Official Full Name
    predicted gene 15056provided by MGI
    Primary source
    MGI:MGI:3705859
    See related
    Ensembl:ENSMUSG00000082976 AllianceGenome:MGI:3705859
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Defb52
    Expression
    Restricted expression toward genital fat pad adult (RPKM 8.9) See more
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    Genomic context

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    See Gm15056 in Genome Data Viewer
    Location:
    8 A2; 8 10.35 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21390622..21392472, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (20900606..20902456, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 48 pseudogene Neighboring gene proline rich 14-like pseudogene Neighboring gene defensin beta 33 Neighboring gene predicted gene 6040 Neighboring gene cDNA sequence AY761185 Neighboring gene STARR-seq mESC enhancer starr_20881 Neighboring gene STARR-seq mESC enhancer starr_20883 Neighboring gene STARR-seq mESC enhancer starr_20885 Neighboring gene defensin, alpha, 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. Patil AA, et al. Physiol Genomics, 2005 Sep 21. PMID 16033865
    2. Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome. Amid C, et al. BMC Genomics, 2009 Dec 15. PMID 20003482, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC100504014
    Names
    beta-defensin 52
    defensin beta 52

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177471.2 → NP_001170942.1  uncharacterized protein LOC100504014 precursor

      Status: VALIDATED

      Source sequence(s)
      AC140205
      Consensus CDS
      CCDS52500.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      21390622..21392472 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242103.2 → XP_011240405.1  uncharacterized protein LOC100504014 isoform X1

      UniProtKB/TrEMBL
      E9Q8Z3
      Related
      ENSMUSP00000119300.3, ENSMUST00000122025.9
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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