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    Ankrd39 ankyrin repeat domain 39 [ Mus musculus (house mouse) ]

    Gene ID: 109346, updated on 2-Nov-2024

    Summary

    Official Symbol
    Ankrd39provided by MGI
    Official Full Name
    ankyrin repeat domain 39provided by MGI
    Primary source
    MGI:MGI:1914816
    See related
    Ensembl:ENSMUSG00000079610 AllianceGenome:MGI:1914816
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9130416N05Rik; C030004B10Rik
    Summary
    Is expressed in dorsal root ganglion and ventral grey horn. Orthologous to human ANKRD39 (ankyrin repeat domain 39). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in ovary adult (RPKM 9.8), adrenal adult (RPKM 7.8) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Ankrd39 in Genome Data Viewer
    Location:
    1 B; 1 15.32 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (36577252..36586333, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (36538171..36547252, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33454 Neighboring gene cyclin M4 Neighboring gene STARR-positive B cell enhancer mm9_chr1:36568490-36568791 Neighboring gene cyclin M3 Neighboring gene ankyrin repeat domain 23 Neighboring gene STARR-positive B cell enhancer ABC_E320 Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C Neighboring gene family with sequence similarity 178, member B Neighboring gene STARR-seq mESC enhancer starr_00646

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 39

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310533.1NP_001297462.1  ankyrin repeat domain-containing protein 39 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction in the 3' end of the coding sequence compared to variant 1, that causes a frameshift. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AK042896, BB858219, BC144893, CD775078
      Consensus CDS
      CCDS78565.1
      UniProtKB/TrEMBL
      A0A0A6YWV1
      Related
      ENSMUSP00000141712.2, ENSMUST00000194894.4
      Conserved Domains (3) summary
      cd00204
      Location:38140
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:38127
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:6394
      ANK; ANK repeat [structural motif]
    2. NM_026241.4NP_080517.1  ankyrin repeat domain-containing protein 39 isoform 1

      See identical proteins and their annotated locations for NP_080517.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK042896, BB858219, BC119100, CD775078
      Consensus CDS
      CCDS14883.1
      UniProtKB/Swiss-Prot
      Q9D2X0
      UniProtKB/TrEMBL
      Q14A32
      Related
      ENSMUSP00000001172.6, ENSMUST00000001172.12
      Conserved Domains (4) summary
      cd00204
      Location:38150
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:38127
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:116170
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:6494
      ANK; ANK repeat [structural motif]

    RNA

    1. NR_132321.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate splice junction in the 5' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK030874, BB858219, CD775078

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      36577252..36586333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)