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    zc3h18 zinc finger CCCH-type containing 18 [ Danio rerio (zebrafish) ]

    Gene ID: 555770, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zc3h18provided by ZNC
    Official Full Name
    zinc finger CCCH-type containing 18provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050419-13
    See related
    Ensembl:ENSDARG00000062506 AllianceGenome:ZFIN:ZDB-GENE-050419-13
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    nhn1; si:ch211-218c6.1
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZC3H18 (zinc finger CCCH-type containing 18). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zc3h18 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (17079186..17147600, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (17090123..17158539, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 6 homolog (Drosophila) Neighboring gene interleukin 17c Neighboring gene thyrotropin releasing hormone receptor 2 Neighboring gene zinc finger protein, FOG family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genome wide analysis of 3' UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. Vejnar CE, et al. Genome Res, 2019 Jul. PMID 31227602, Free PMC Article
    2. Analyses of mRNA structure dynamics identify embryonic gene regulatory programs. Beaudoin JD, et al. Nat Struct Mol Biol, 2018 Aug. PMID 30061596, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 18
    Names
    conserved nuclear protein Nhn1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044339.2 → NP_001037804.1  zinc finger CCCH domain-containing protein 18

      See identical proteins and their annotated locations for NP_001037804.1

      Status: PROVISIONAL

      Source sequence(s)
      AL935038, BX950194
      UniProtKB/Swiss-Prot
      Q1LUE5
      Related
      ENSDARP00000084879.4, ENSDART00000090446.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      17079186..17147600 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068214775.1 → XP_068070876.1  zinc finger CCCH domain-containing protein 18 isoform X4

    2. XM_068214774.1 → XP_068070875.1  zinc finger CCCH domain-containing protein 18 isoform X3

    3. XM_068214773.1 → XP_068070874.1  zinc finger CCCH domain-containing protein 18 isoform X2

      Related
      ENSDARP00000132619.1, ENSDART00000169080.3

    4. XM_005159092.5 → XP_005159149.1  zinc finger CCCH domain-containing protein 18 isoform X1

      UniProtKB/TrEMBL
      A0A8M2B620

    5. XM_009293559.4 → XP_009291834.1  zinc finger CCCH domain-containing protein 18 isoform X2

      UniProtKB/TrEMBL
      A0A0R4IEF8, A0A8M3B2V4

    6. XM_068214772.1 → XP_068070873.1  zinc finger CCCH domain-containing protein 18 isoform X1

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395018.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      182..43260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395338.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      288630..307225 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1LUE5.1 GenPept UniProtKB/Swiss-Prot:Q1LUE5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.