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    PNKY long intergenic non-protein coding RNA PNKY [ Homo sapiens (human) ]

    Gene ID: 105447646, updated on 17-Sep-2024

    Summary

    Gene symbol
    PNKY
    Gene description
    long intergenic non-protein coding RNA PNKY
    See related
    MIM:616328
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
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    Genomic context

    See PNKY in Genome Data Viewer
    Location:
    6q16.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (98830141..98831700, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (100004511..100006070, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (99278017..99279576, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3 Neighboring gene VISTA enhancer hs284 Neighboring gene VISTA enhancer hs1128 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:98864666-98865249 Neighboring gene VISTA enhancer hs1081 Neighboring gene uncharacterized LOC105377910 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98973520-98974100 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:98974101-98974679 Neighboring gene NANOG hESC enhancer GRCh37_chr6:98998595-98999096 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99084768-99085311 Neighboring gene VISTA enhancer hs1085 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:99150974-99151146 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:99164203-99164752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99235638-99236138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99236139-99236639 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273031-99273536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99273537-99274042 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17411 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24850 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99283167-99283763 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:99283764-99284359 Neighboring gene uncharacterized LOC124901364 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24851 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17412 Neighboring gene POU class 3 homeobox 2 Neighboring gene CRE2 CAGE-defined tissue-specific enhancer

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148381.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL022395, AL589826

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      98830141..98831700 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      100004511..100006070 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)