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    SEPTIN7-DT SEPTIN7 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928545, updated on 22-Oct-2024

    Summary

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    Official Symbol
    SEPTIN7-DTprovided by HGNC
    Official Full Name
    SEPTIN7 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:51153
    See related
    Ensembl:ENSG00000228878 AllianceGenome:HGNC:51153
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SEPT7-AS1; SEPTIN7-AS1
    Expression
    Broad expression in testis (RPKM 1.5), thyroid (RPKM 1.2) and 24 other tissues See more
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    Genomic context

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    See SEPTIN7-DT in Genome Data Viewer
    Location:
    7p14.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (35754964..35800625, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (35895962..35941626, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (35794574..35840235, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 3013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25839 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25841 Neighboring gene uncharacterized LOC124901615 Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25842 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:35840081-35840704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18097 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18098 Neighboring gene septin 7 Neighboring gene gem-associated protein 7-like Neighboring gene RNA, U6 small nuclear 1085, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • SEPT7 antisense RNA 1 (head to head)

    Clone Names

    • AC007551.3, DKFZp779B0967

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120511.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      BX502136, DA298199, DA751237
      Related
      ENST00000736368.1

    2. NR_120512.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at the 5' terminal exon and lacks an exon in the 3' region, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC007551, BX502136, DA751237

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      35754964..35800625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      35895962..35941626 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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