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    ddx31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 [ Danio rerio (zebrafish) ]

    Gene ID: 325248, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ddx31provided by ZNC
    Official Full Name
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 31provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3973
    See related
    Ensembl:ENSDARG00000035507 AllianceGenome:ZFIN:ZDB-GENE-030131-3973
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc62b08; wu:fc62b08; si:ch211-89p1.3
    Summary
    Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human DDX31 (DEAD-box helicase 31). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ddx31 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (29714789..29745566)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (29114618..29145476)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene sperm acrosome associated 9 Neighboring gene adenylate kinase 8 Neighboring gene BarH-like homeobox 1a Neighboring gene cilia and flagella associated protein 77 Neighboring gene si:ch211-215c18.3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Convergent extension movements and ciliary function are mediated by ofd1, a zebrafish orthologue of the human oral-facial-digital type 1 syndrome gene. Ferrante MI, et al. Hum Mol Genet, 2009 Jan 15. PMID 18971206, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosome biogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX31; ATP-dependent DNA helicase DDX31
    Names
    DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31
    XP_021327284.1
    XP_021332164.1
    XP_683832.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      29714789..29745566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476489.2 → XP_021332164.1  ATP-dependent DNA helicase DDX31

      UniProtKB/TrEMBL
      A0A8M9Q461, A2BFD2
      Related
      ENSDARP00000119101.1, ENSDART00000148314.3
      Conserved Domains (3) summary
      COG0513
      Location:129 → 613
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam13959
      Location:607 → 668
      DUF4217; Domain of unknown function (DUF4217)
      cl27863
      Location:2 → 131
      SSL_OB; Staphylococcal superantigen-like OB-fold domain

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394581.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      75488..104472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021471609.2 → XP_021327284.1  ATP-dependent DNA helicase DDX31

      UniProtKB/TrEMBL
      A0A8M9PQY5
      Conserved Domains (2) summary
      COG0513
      Location:124 → 613
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam13959
      Location:607 → 668
      DUF4217; Domain of unknown function (DUF4217)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395239.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      74328..105329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_678740.9 → XP_683832.2  ATP-dependent DNA helicase DDX31

      UniProtKB/TrEMBL
      A0A8N7TAG0
      Conserved Domains (3) summary
      COG0513
      Location:129 → 613
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam13959
      Location:607 → 668
      DUF4217; Domain of unknown function (DUF4217)
      cl27863
      Location:2 → 131
      SSL_OB; Staphylococcal superantigen-like OB-fold domain
    Nucleotide Protein Strain
    Heading Accession and Version

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