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    ints8 integrator complex subunit 8 [ Danio rerio (zebrafish) ]

    Gene ID: 553794, updated on 2-Nov-2024

    Summary

    Official Symbol
    ints8provided by ZNC
    Official Full Name
    integrator complex subunit 8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-556
    See related
    Ensembl:ENSDARG00000057986 AllianceGenome:ZFIN:ZDB-GENE-050522-556
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:111823
    Summary
    Predicted to be involved in snRNA 3'-end processing. Predicted to be located in nucleus. Predicted to be part of integrator complex. Orthologous to human INTS8 (integrator complex subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See ints8 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (17837950..17996212, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (18379389..18537703, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene DNA topoisomerase II beta Neighboring gene pyroglutamylated RFamide peptide Neighboring gene sorting nexin 10a Neighboring gene chromobox homolog 3a (HP1 gamma homolog, Drosophila)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC111823

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in snRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within snRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of integrator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    integrator complex subunit 8
    Names
    DKEYP-26F11.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020756.2NP_001018592.2  integrator complex subunit 8

      Status: VALIDATED

      Source sequence(s)
      BX927231, CR388100, CR391921
      UniProtKB/TrEMBL
      A0A8M1N674, A3KQN9
      Related
      ENSDARP00000095264.3, ENSDART00000104491.5

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      17837950..17996212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215129.1XP_068071230.1  integrator complex subunit 8 isoform X1