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    rpl7a ribosomal protein L7a [ Danio rerio (zebrafish) ]

    Gene ID: 337010, updated on 28-Oct-2024

    Summary

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    Official Symbol
    rpl7aprovided by ZNC
    Official Full Name
    ribosomal protein L7aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031001-9
    See related
    Ensembl:ENSDARG00000019230 AllianceGenome:ZFIN:ZDB-GENE-031001-9
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:73183; zgc:86667; wu:fa95b03
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a). [provided by Alliance of Genome Resources, Oct 2024]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See rpl7a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (33284144..33286817, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (32683991..32686664, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene surfeit 6 Neighboring gene SURF1 cytochrome c oxidase assembly factor Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD36 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene small nucleolar RNA SNORD24 Neighboring gene mediator complex subunit 22 Neighboring gene zgc:103692

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Subtractive phage display technology identifies zebrafish marcksb that is required for gastrulation. Wang YW, et al. Gene, 2013 May 25. PMID 23537994
    2. Identification and characterization of zebrafish ocular formation genes. Wang H, et al. Genome, 2008 Mar. PMID 18356958
    3. Transcriptomic characterization of temperature stress responses in larval zebrafish. Long Y, et al. PLoS One, 2012. PMID 22666345, Free PMC Article
    4. Evolutionary and developmental analysis reveals KANK genes were co-opted for vertebrate vascular development. Hensley MR, et al. Sci Rep, 2016 Jun 13. PMID 27292017, Free PMC Article
    5. A multi-omic approach to elucidate low-dose effects of xenobiotics in zebrafish (Danio rerio) larvae. Huang SSY, et al. Aquat Toxicol, 2017 Jan. PMID 27886581

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200047.1 → NP_956341.1  large ribosomal subunit protein eL8

      See identical proteins and their annotated locations for NP_956341.1

      Status: PROVISIONAL

      Source sequence(s)
      BC059533
      UniProtKB/TrEMBL
      A5WUL5, Q6PBZ1
      Related
      ENSDARP00000151111.1, ENSDART00000184426.1
      Conserved Domains (2) summary
      PTZ00365
      Location:12 → 266
      PTZ00365; 60S ribosomal protein L7Ae-like; Provisional
      cl00600
      Location:13 → 252
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      33284144..33286817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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