zgc:172323 zgc:172323 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:172323provided by ZNC
Official Full Name: zgc:172323provided by ZNC
Primary source: ZFIN:ZDB-GENE-080204-113
See related: Ensembl:ENSDARG00000053201 AllianceGenome:ZFIN:ZDB-GENE-080204-113
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be involved in skeletal muscle organ development. Predicted to be located in intermediate filament. Predicted to be active in Z disc; cell-cell junction; and sarcolemma. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (32736588..32743653)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (32782558..32789623)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info
involved_in skeletal muscle organ development	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Z disc	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cell-cell junction	IBA Inferred from Biological aspect of Ancestor more info
located_in intermediate filament	IEA Inferred from Electronic Annotation more info
located_in intermediate filament	ISS Inferred from Sequence or Structural Similarity more info	PubMed
is_active_in sarcolemma	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC564165

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001114427.1 → NP_001107899.1 uncharacterized protein LOC564165

See identical proteins and their annotated locations for NP_001107899.1

Status: PREDICTED

Source sequence(s)

BC155653

UniProtKB/TrEMBL

A0A8M1NFZ2, A9JRG7

Related

ENSDARP00000069676.5, ENSDART00000075191.7

Conserved Domains (4) summary

pfam00038
Location:108 → 418

Filament; Intermediate filament protein

pfam04732
Location:7 → 107

Filament_head; Intermediate filament head (DNA binding) region

pfam13863
Location:123 → 248

DUF4200; Domain of unknown function (DUF4200)

pfam15272
Location:229 → 378

BBP1_C; Spindle pole body component BBP1, C-terminal