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    PCAT19 prostate cancer associated transcript 19 [ Homo sapiens (human) ]

    Gene ID: 100505495, updated on 17-Sep-2024

    Summary

    Official Symbol
    PCAT19provided by HGNC
    Official Full Name
    prostate cancer associated transcript 19provided by HGNC
    Primary source
    HGNC:HGNC:49593
    See related
    Ensembl:ENSG00000267107 MIM:618192; AllianceGenome:HGNC:49593
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01190
    Expression
    Broad expression in fat (RPKM 5.8), lung (RPKM 5.0) and 22 other tissues See more
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    Genomic context

    See PCAT19 in Genome Data Viewer
    Location:
    19q13.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (41454169..41500649, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (44275440..44321937, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (41960074..42006559, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14683 Neighboring gene glutamate rich 4 Neighboring gene tropomyosin 3 pseudogene 5 Neighboring gene pleckstrin homology domain containing A3 pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • long intergenic non-protein coding RNA 1190
    • prostate cancer associated transcript 19 (non-protein coding)

    Clone Names

    • FLJ60315

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040109.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011526, AC243960, AK309432, BC070102
      Related
      ENST00000588495.6
    2. NR_136334.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC011526, AC243960, AK309432, BC070102
      Related
      ENST00000652144.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      41454169..41500649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187620.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      188805..233747
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001756399.2 RNA Sequence

    2. XR_001756400.2 RNA Sequence

    3. XR_002958911.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      44275440..44321937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)