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    LINC01432 long intergenic non-protein coding RNA 1432 [ Homo sapiens (human) ]

    Gene ID: 100270679, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01432provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1432provided by HGNC
    Primary source
    HGNC:HGNC:50745
    See related
    Ensembl:ENSG00000234435 AllianceGenome:HGNC:50745
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01432 in Genome Data Viewer
    Location:
    20p11.22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22054090..22074654)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22111150..22131719)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22034728..22055292)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 6 pseudogene 1 Neighboring gene ribosomal protein L41 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21789824-21790630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21790631-21791436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:21917369-21917960 Neighboring gene Xe1 enhancer downstream of PAX1 Neighboring gene PEC7 enhancer downstream of PAX1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:21982513-21983712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21989996-21990496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:22026257-22026923 Neighboring gene uncharacterized LOC105372560 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219376-22219876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219877-22220377 Neighboring gene Sharpr-MPRA regulatory region 10919 Neighboring gene uncharacterized LOC105372561 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:22245080-22246279

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Male-pattern baldness susceptibility locus at 20p11.
    EBI GWAS Catalog
    Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038394.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL157412, BC038192
      Related
      ENST00000449427.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      22054090..22074654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      22111150..22131719
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)