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    Glt6d1 glycosyltransferase 6 domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296577, updated on 10-Jul-2024

    Summary

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    Official Symbol
    Glt6d1provided by RGD
    Official Full Name
    glycosyltransferase 6 domain containing 1provided by RGD
    Primary source
    RGD:1311348
    See related
    EnsemblRapid:ENSRNOG00000027900 AllianceGenome:RGD:1311348
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    GT6m7; Gltdc1
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. Orthologous to human GLT6D1 (glycosyltransferase 6 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 169.2) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Glt6d1 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (29026023..29037010, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8627793..8638537, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (3255645..3266276, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E, pseudogene 4 Neighboring gene lipocalin-15 like 1 Neighboring gene lipocalin 9 Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Long-term evolution of the CAZY glycosyltransferase 6 (ABO) gene family from fishes to mammals--a birth-and-death evolution model. Turcot-Dubois AL, et al. Glycobiology, 2007 May. PMID 17298992
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipid glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    glycosyltransferase 6 domain-containing protein 1
    Names
    galactosyltransferase family 6 domain containing 1
    NP_001100029.2
    XP_006233733.1
    XP_038960647.1
    XP_038960648.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106559.2 → NP_001100029.2  glycosyltransferase 6 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001100029.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      D3ZNQ3
      Related
      ENSRNOP00000034274.4, ENSRNOT00000034538.7
      Conserved Domains (1) summary
      cl11394
      Location:45 → 305
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      29026023..29037010 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233671.5 → XP_006233733.1  glycosyltransferase 6 domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006233733.1

      UniProtKB/Swiss-Prot
      D3ZNQ3
      Conserved Domains (1) summary
      cl11394
      Location:45 → 305
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_039104719.2 → XP_038960647.1  glycosyltransferase 6 domain-containing protein 1 isoform X2

      Related
      ENSRNOP00000110542.1, ENSRNOT00000163666.1
      Conserved Domains (1) summary
      cl11394
      Location:29 → 289
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    3. XM_039104720.2 → XP_038960648.1  glycosyltransferase 6 domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      cl11394
      Location:1 → 199
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    D3ZNQ3.1 GenPept UniProtKB/Swiss-Prot:D3ZNQ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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