U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC105379362 uncharacterized LOC105379362 [ Homo sapiens (human) ]

    Gene ID: 105379362, updated on 28-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105379362
    Gene description
    uncharacterized LOC105379362
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 1.5), testis (RPKM 0.9) and 17 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105379362 in Genome Data Viewer
    Location:
    8p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (32927977..33050049)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (33198092..33320162)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene neuregulin 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:32504369-32504970 Neighboring gene uncharacterized LOC128092250 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579026-32579596 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32579597-32580167 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:32617179-32618378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27217 Neighboring gene RNA, U6 small nuclear 663, pseudogene Neighboring gene nuclear-encoded mitochondrial tRNA-Gln (TTG) 11-1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:32858695-32859305 Neighboring gene MT-ND2 pseudogene 32 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:32986477-32987676 Neighboring gene MT-ND1 pseudogene 6 Neighboring gene RAN pseudogene 9 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:33201768-33202321 Neighboring gene NANOG hESC enhancer GRCh37_chr8:33210014-33210633 Neighboring gene RNA, U6 small nuclear 528, pseudogene Neighboring gene RNA binding motif protein 4 pseudogene Neighboring gene fucosyltransferase 10

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_188148.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    2. NR_188149.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    3. NR_188150.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    4. NR_188151.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    5. NR_188152.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    6. NR_188153.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    7. NR_188154.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    8. NR_188155.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    9. NR_188156.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090204, AC113209

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      32927977..33050049
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      33198092..33320162
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases