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    LINC00682 long intergenic non-protein coding RNA 682 [ Homo sapiens (human) ]

    Gene ID: 101927074, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00682provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 682provided by HGNC
    Primary source
    HGNC:HGNC:44466
    See related
    Ensembl:ENSG00000245870 AllianceGenome:HGNC:44466
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in adrenal (RPKM 1.5), duodenum (RPKM 0.1) and 1 other tissue See more
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    Genomic context

    See LINC00682 in Genome Data Viewer
    Location:
    4p13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (41879521..41882611, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (41853330..41856420, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (41881538..41884628, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene PHOX2B antisense RNA 1 Neighboring gene RNA, U1 small nuclear 49, pseudogene Neighboring gene Sharpr-MPRA regulatory region 462 Neighboring gene high mobility group box 1 pseudogene 28 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:41881826-41882578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:41883331-41884082 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15389 Neighboring gene uncharacterized LOC124900696 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:41910569-41911460 Neighboring gene uncharacterized LOC105374426 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:41914902-41916101

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_104143.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC025350, DA908871
      Related
      ENST00000499082.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      41879521..41882611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      41853330..41856420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)