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    Elobl elongin B-like [ Mus musculus (house mouse) ]

    Gene ID: 217066, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Eloblprovided by MGI
    Official Full Name
    elongin B-likeprovided by MGI
    Primary source
    MGI:MGI:1860403
    See related
    Ensembl:ENSMUSG00000057534 AllianceGenome:MGI:1860403
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tceb2l; Gm15698
    Summary
    Predicted to be part of VCB complex and elongin complex. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in ovary adult (RPKM 7.4) and genital fat pad adult (RPKM 1.3) See more
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    Genomic context

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    See Elobl in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88855484..88857782, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88964658..88966931, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase 1, opposite strand Neighboring gene predicted gene, 23507 Neighboring gene serine carboxypeptidase 1 Neighboring gene STARR-seq mESC enhancer starr_30370 Neighboring gene STARR-seq mESC enhancer starr_30374 Neighboring gene STARR-positive B cell enhancer ABC_E3993 Neighboring gene STARR-seq mESC enhancer starr_30376 Neighboring gene STARR-seq mESC enhancer starr_30377 Neighboring gene STARR-positive B cell enhancer ABC_E10705 Neighboring gene transcription elongation factor B (SIII), polypeptide 2 pseudogene Neighboring gene coilin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Structure and characterization of the murine p80 coilin gene, Coil. Tucker KE, et al. J Struct Biol, 2000 Apr. PMID 10806077
    2. Thirteen Ovary-Enriched Genes Are Individually Not Essential for Female Fertility in Mice. Pham AH, et al. Cells, 2024 May 8. PMID 38786026, Free PMC Article
    3. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
    4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    5. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of VCB complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of elongin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    elongin B-like
    Names
    transcription elongation factor B (SIII), polypeptide 2 (18 kDa, elongin B),-like
    transcription elongation factor B (SIII), polypeptide 2 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001360780.1 → NP_001347709.1  elongin B-like

      Status: VALIDATED

      Source sequence(s)
      DV653579, DV655088
      Consensus CDS
      CCDS88218.1
      UniProtKB/TrEMBL
      A6PWE0
      Related
      ENSMUSP00000113104.2, ENSMUST00000121228.2
      Conserved Domains (1) summary
      cd01788
      Location:2 → 94
      Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88855484..88857782 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030245855.2 → XP_030101715.1  elongin B-like isoform X1

      UniProtKB/TrEMBL
      A6PWE0
      Related
      ENSMUSP00000103534.2, ENSMUST00000061938.14
      Conserved Domains (1) summary
      cd01788
      Location:2 → 94
      Ubl_ElonginB; ubiquitin-like (Ubl) domain found in transcription elongation factor B (Elongin B) and similar proteins

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001025564.1: Suppressed sequence

      Description
      NM_001025564.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.

    2. NR_003564.1: Suppressed sequence

      Description
      NR_003564.1: This RefSeq was removed because it is now thought this gene encodes a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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