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    Transmembrane CLPTM1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830749, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Transmembrane CLPTM1 family protein
    Primary source
    TAIR:AT5G08500
    Locus tag
    AT5G08500
    See related
    Araport:AT5G08500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F8L15.19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (2748133..2751888)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene peroxisome 1 Neighboring gene VQ motif-containing protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Duplicated homeodomain-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120935.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Transmembrane CLPTM1 family protein
    NP_196467.1
    • Transmembrane CLPTM1 family protein; CONTAINS InterPro DOMAIN/s: Cleft lip and palate transmembrane 1 (InterPro:IPR008429); BEST Arabidopsis thaliana protein match is: Transmembrane CLPTM1 family protein (TAIR:AT5G23575.1); Has 489 Blast hits to 489 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 77; Plants - 58; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2748133..2751888
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343015.1 → NP_001332181.1  Transmembrane CLPTM1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BG69, A0A5S9Y3C6

    2. NM_120935.4 → NP_196467.1  Transmembrane CLPTM1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196467.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y3C6, Q9FNN8
      Conserved Domains (1) summary
      pfam05602
      Location:33 → 463
      CLPTM1; Cleft lip and palate transmembrane protein 1 (CLPTM1)
    Nucleotide Protein
    Heading Accession and Version

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