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    Oscar osteoclast associated receptor [ Mus musculus (house mouse) ]

    Gene ID: 232790, updated on 2-Nov-2024

    Summary

    Official Symbol
    Oscarprovided by MGI
    Official Full Name
    osteoclast associated receptorprovided by MGI
    Primary source
    MGI:MGI:2179720
    See related
    Ensembl:ENSMUSG00000054594 AllianceGenome:MGI:2179720
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mOSCAR; mOSCAR-M1; mOSCAR-M2; mOSCAR-M3
    Summary
    Enables collagen receptor activity. Acts upstream of or within Fc-gamma receptor signaling pathway; multinuclear osteoclast differentiation; and positive regulation of bone resorption. Located in cell surface. Is expressed in testis. Orthologous to human OSCAR (osteoclast associated Ig-like receptor). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in frontal lobe adult (RPKM 1.4), testis adult (RPKM 1.4) and 19 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Oscar in Genome Data Viewer
    Location:
    7 A1; 7 2.08 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (3612812..3619156, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (3609813..3616157, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35037 Neighboring gene predicted gene, 45920 Neighboring gene STARR-seq mESC enhancer starr_17907 Neighboring gene T cell-interacting, activating receptor on myeloid cells 1 Neighboring gene STARR-seq mESC enhancer starr_17908 Neighboring gene STARR-seq mESC enhancer starr_17909 Neighboring gene STARR-seq mESC enhancer starr_17910 Neighboring gene STARR-seq mESC enhancer starr_17911 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:3581200-3581309 Neighboring gene STARR-positive B cell enhancer ABC_E2811 Neighboring gene NADH:ubiquinone oxidoreductase subunit A3 Neighboring gene TCF3 (E2A) fusion partner

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (3)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables collagen receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables collagen receptor activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables collagen receptor activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    osteoclast-associated immunoglobulin-like receptor
    Names
    ocl178
    osteoclast-associated receptor OSCAR

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001290377.1NP_001277306.1  osteoclast-associated immunoglobulin-like receptor isoform 2 precursor

      See identical proteins and their annotated locations for NP_001277306.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice junction at the 3' end of the first exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
      Source sequence(s)
      AF391159, AF391160
      Consensus CDS
      CCDS71872.1
      UniProtKB/Swiss-Prot
      Q8VBT3, Q8VHT9
      UniProtKB/TrEMBL
      B2RQ61
      Related
      ENSMUSP00000104285.2, ENSMUST00000108645.8
      Conserved Domains (1) summary
      cl11960
      Location:30123
      Ig; Immunoglobulin domain
    2. NM_175632.3NP_783440.1  osteoclast-associated immunoglobulin-like receptor isoform 1 precursor

      See identical proteins and their annotated locations for NP_783440.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AF391160, AF391161
      Consensus CDS
      CCDS20718.1
      UniProtKB/TrEMBL
      B2RQ61
      Related
      ENSMUSP00000041306.8, ENSMUST00000039507.15
      Conserved Domains (1) summary
      cl11960
      Location:36129
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      3612812..3619156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)