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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001164210.2 → NP_001157682.1 serine palmitoyltransferase small subunit B isoform a
See identical proteins and their annotated locations for NP_001157682.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 encode the same protein (isoform a).
- Source sequence(s)
-
AC122009, AK004017, AK009973, BC022628
- Consensus CDS
-
CCDS38453.1
- UniProtKB/Swiss-Prot
-
Q925E8
- Related
- ENSMUSP00000131241.2, ENSMUST00000171529.4
- Conserved Domains (1) summary
-
- pfam11779
Location:7 → 60
- SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
-
NM_001286959.1 → NP_001273888.1 serine palmitoyltransferase small subunit B isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and has a different 3' structure which results in a frameshift compared to variant 1. The resulting isoform (b) has a distinct C-terminus and is shorter than isoform a.
- Source sequence(s)
-
AC122009
- Conserved Domains (1) summary
-
- pfam11779
Location:7 → 57
- DUF3317; Protein of unknown function (DUF3317)
-
NM_133675.3 → NP_598436.1 serine palmitoyltransferase small subunit B isoform a
See identical proteins and their annotated locations for NP_598436.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein (isoform a).
- Source sequence(s)
-
AC122009, AK004017, BC022628
- Consensus CDS
-
CCDS38453.1
- UniProtKB/Swiss-Prot
-
Q925E8
- Related
- ENSMUSP00000062794.8, ENSMUST00000051239.13
- Conserved Domains (1) summary
-
- pfam11779
Location:7 → 60
- SPT_ssu-like; Small subunit of serine palmitoyltransferase-like
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000069.7 Reference GRCm39 C57BL/6J
- Range
-
69726871..69768697 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_030252751.2 → XP_030108611.1 serine palmitoyltransferase small subunit B isoform X1