U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc7b coiled-coil domain containing 7B [ Mus musculus (house mouse) ]

    Gene ID: 75453, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ccdc7bprovided by MGI
    Official Full Name
    coiled-coil domain containing 7Bprovided by MGI
    Primary source
    MGI:MGI:1922703
    See related
    Ensembl:ENSMUSG00000056018 AllianceGenome:MGI:1922703
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700008F21Rik
    Summary
    Orthologous to human CCDC7 (coiled-coil domain containing 7). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 13.0) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ccdc7b in Genome Data Viewer
    Location:
    8 E2; 8 76.17 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (129793592..129910213)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (129067111..129183732)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 7A Neighboring gene predicted gene, 26100 Neighboring gene STARR-seq mESC enhancer starr_23108 Neighboring gene STARR-positive B cell enhancer mm9_chr8:131465278-131465579 Neighboring gene predicted gene, 22545 Neighboring gene STARR-seq mESC enhancer starr_23110 Neighboring gene STARR-seq mESC enhancer starr_23111 Neighboring gene STARR-seq mESC enhancer starr_23112 Neighboring gene STARR-seq mESC enhancer starr_23113 Neighboring gene predicted gene, 22374 Neighboring gene STARR-seq mESC enhancer starr_23114 Neighboring gene STARR-seq mESC enhancer starr_23115 Neighboring gene zinc finger protein 1006 Neighboring gene peroxiredoxin pseudogene 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC75453

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001168369.1 → NP_001161841.1  uncharacterized protein LOC75453 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK005764, BC050962, BC147560, BX638588
      Consensus CDS
      CCDS52713.1
      UniProtKB/TrEMBL
      E9Q9Y3
      Related
      ENSMUSP00000026912.7, ENSMUST00000026912.8
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 109
      BioT2; Spermatogenesis family BioT2

    2. NM_001369028.1 → NP_001355957.1  uncharacterized protein LOC75453 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC148114
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 166
      BioT2; Spermatogenesis family BioT2

    3. NM_001369029.1 → NP_001355958.1  uncharacterized protein LOC75453 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC148114
      Conserved Domains (1) summary
      pfam15368
      Location:1 → 166
      BioT2; Spermatogenesis family BioT2

    4. NM_029292.3 → NP_083568.2  uncharacterized protein LOC75453 isoform 2

      See identical proteins and their annotated locations for NP_083568.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has alternate splice sites in the 5' region, as compared to variant 1, which results in a downstream AUG start codon. The resulting isoform (2) is much shorter at the N-terminus, as compared to isoform 1.
      Source sequence(s)
      AK005764, BC147560, BX638588
      Consensus CDS
      CCDS52714.1
      UniProtKB/TrEMBL
      B9EJU4, Q9DAK5
      Related
      ENSMUSP00000104378.2, ENSMUST00000108745.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      129793592..129910213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243825.1 → XP_030099685.1  uncharacterized protein LOC75453 isoform X1

      Conserved Domains (1) summary
      pfam15368
      Location:1 → 166
      BioT2; Spermatogenesis family BioT2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools