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    Ovol2 ovo like zinc finger 2 [ Mus musculus (house mouse) ]

    Gene ID: 107586, updated on 4-Nov-2024

    Summary

    Official Symbol
    Ovol2provided by MGI
    Official Full Name
    ovo like zinc finger 2provided by MGI
    Primary source
    MGI:MGI:1338039
    See related
    Ensembl:ENSMUSG00000037279 AllianceGenome:MGI:1338039
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MOVO; Ovo2; M-OVO; movo2; Zfp339; M-OVO-A; M-OVO-B; 1700108N11Rik; 1810007D21Rik
    Summary
    Enables DNA binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and chromatin binding activity. Involved in several processes, including negative regulation of epithelial to mesenchymal transition; negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and regulation of gene expression. Acts upstream of or within several processes, including circulatory system development; positive regulation of keratinocyte differentiation; and tube morphogenesis. Located in nucleus. Is expressed in several structures, including early conceptus; genitourinary system; gut; head surface ectoderm; and otocyst. Human ortholog(s) of this gene implicated in posterior polymorphous corneal dystrophy 1. Orthologous to human OVOL2 (ovo like zinc finger 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 23.4), colon adult (RPKM 9.7) and 8 other tissues See more
    Orthologs
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    Genomic context

    See Ovol2 in Genome Data Viewer
    Location:
    2 G1; 2 70.99 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (144147095..144174000, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (144305175..144332080, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene sorting nexin 5 Neighboring gene STARR-positive B cell enhancer ABC_E5994 Neighboring gene STARR-positive B cell enhancer ABC_E5995 Neighboring gene small nucleolar RNA, C/D box 17 Neighboring gene STARR-seq mESC enhancer starr_05908 Neighboring gene mitochondrial genome maintenance exonuclease 1 Neighboring gene STARR-positive B cell enhancer ABC_E9536 Neighboring gene predicted gene, 34181 Neighboring gene peptidylprolyl isomerase A pseudogene 2_1789.1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within dorsal/ventral pattern formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within embryonic digestive tract morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within endocardium formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in epidermal cell differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in epidermal cell differentiation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within epidermis development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within heart development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within heart looping IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within heart trabecula formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within labyrinthine layer blood vessel development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of Notch signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of Notch signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in negative regulation of SMAD protein signal transduction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within negative regulation of cell population proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of epithelial to mesenchymal transition IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of epithelial to mesenchymal transition IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in negative regulation of keratinocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of keratinocyte differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    acts_upstream_of_or_within negative regulation of stem cell proliferation IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of transcription by competitive promoter binding ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transforming growth factor beta receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within neural crest cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within neural fold formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of gene expression IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of keratinocyte differentiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cell cycle ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of keratinocyte proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of keratinocyte proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    transcription factor Ovo-like 2
    Names
    MOVO-B zinc finger protein
    MOVO-C zinc finger protein
    OVO homolog-like 2
    ovo-like 2
    zinc finger OVO2
    zinc finger protein 339
    zinc finger protein mOVO

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026924.3NP_081200.2  transcription factor Ovo-like 2 isoform A

      See identical proteins and their annotated locations for NP_081200.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (A) represents the longer transcript and encodes the longer isoform (A).
      Source sequence(s)
      AL808123
      Consensus CDS
      CCDS16817.1
      UniProtKB/Swiss-Prot
      Q505Q7, Q6F661, Q8CIV6, Q8CIV7, Q8K0D6, Q9D949
      UniProtKB/TrEMBL
      Q3TIV4
      Related
      ENSMUSP00000044026.4, ENSMUST00000037423.4
      Conserved Domains (3) summary
      PHA00733
      Location:115199
      PHA00733; hypothetical protein
      sd00017
      Location:120140
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:160185
      zf-H2C2_2; Zinc-finger double domain
    2. NM_152947.3NP_694455.2  transcription factor Ovo-like 2 isoform B

      See identical proteins and their annotated locations for NP_694455.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (B) differs in the 5' UTR and coding sequence compared to variant A. The resulting isoform (B) has a shorter and distinct N-terminus compared to isoform A.
      Source sequence(s)
      AL808123
      Consensus CDS
      CCDS16818.1
      UniProtKB/TrEMBL
      Q3TIV4
      Related
      ENSMUSP00000099460.4, ENSMUST00000103171.10
      Conserved Domains (3) summary
      PHA00733
      Location:82166
      PHA00733; hypothetical protein
      sd00017
      Location:87107
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:127152
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      144147095..144174000 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498544.4XP_006498607.1  transcription factor Ovo-like 2 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:3988
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:1737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:2954
      zf-H2C2_2; Zinc-finger double domain