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    LOC105373942 uncharacterized LOC105373942 [ Homo sapiens (human) ]

    Gene ID: 105373942, updated on 17-Jun-2024

    Summary

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    Gene symbol
    LOC105373942
    Gene description
    uncharacterized LOC105373942
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105373942 in Genome Data Viewer
    Location:
    2q37.2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (235747698..235790251, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (236236944..236279496, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene AGAP1 intronic transcript 1 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_57171 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236475811-236476311 Neighboring gene trinucleotide repeat containing 17 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236494510-236495010 Neighboring gene Sharpr-MPRA regulatory region 15430 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236505422-236506274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236539863-236540736 Neighboring gene Sharpr-MPRA regulatory region 12909 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236567081-236567736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599338-236599838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236599839-236600339 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236617362-236618561 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632223-236632790 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236632791-236633358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236696882-236697382 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236701667-236702167 Neighboring gene Sharpr-MPRA regulatory region 1374 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:236735809-236737008 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236757968-236758468 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:236763280-236764479 Neighboring gene VISTA enhancer hs521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236784736-236785236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236785237-236785737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236801538-236802038 Neighboring gene NANOG hESC enhancer GRCh37_chr2:236812532-236813067 Neighboring gene NANOG hESC enhancer GRCh37_chr2:236813068-236813602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236814296-236814796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236814797-236815297 Neighboring gene thymosin beta 10 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236842540-236843040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236843041-236843541 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236859019-236859518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236863470-236863970 Neighboring gene uncharacterized LOC124907999 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236881395-236881894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236908700-236909590 Neighboring gene Sharpr-MPRA regulatory region 6211

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Clone Names

    • AC064874.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      235747698..235790251 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001739943.3 RNA Sequence

    2. XR_001739944.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      236236944..236279496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072952.1 RNA Sequence

    2. XR_007072951.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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