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    RPS11-BETA ribosomal protein S11-beta [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832439, updated on 18-Sep-2024

    Summary

    Official Symbol
    RPS11-BETA
    Official Full Name
    ribosomal protein S11-beta
    Primary source
    TAIR:AT5G23740
    Locus tag
    AT5G23740
    See related
    Araport:AT5G23740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MRO11.22; MRO11_22; RIBOSOMAL PROTEIN S11; ribosomal protein S11-beta
    Summary
    Encodes a putative ribosomal protein S11 (RPS11-beta).
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    Genomic context

    See RPS11-BETA in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (8007921..8009436, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene ncRNA Neighboring gene Remorin family protein Neighboring gene Copper transport protein family Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 8)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_122279.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    PubMed 
    located_in plastid HDA PubMed 

    General protein information

    Preferred Names
    ribosomal protein S11-beta
    NP_197763.1
    • ribosomal protein S11-beta (RPS11-BETA); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, archaeal (InterPro:IPR019978), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G48930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8007921..8009436 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122279.4NP_197763.1  ribosomal protein S11-beta [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197763.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P42733, Q9FFA6
      UniProtKB/TrEMBL
      A0A178UPD3, A0A5S9X0N1, A0A5S9Y6L1, A0A654EX79
      Conserved Domains (1) summary
      PTZ00241
      Location:1156
      PTZ00241; 40S ribosomal protein S11; Provisional