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    LOC100135895 osteopontin-like protein [ Oncorhynchus mykiss (rainbow trout) ]

    Gene ID: 100135895, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100135895
    Gene description
    osteopontin-like protein
    See related
    Ensembl:ENSOMYG00000021668
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Oncorhynchus mykiss
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (17935728..17940707, complement)
    100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (14396049..14400994, complement)

    Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118937634 Neighboring gene serine/threonine-protein phosphatase 2B catalytic subunit Neighboring gene cuticle collagen 2C-like Neighboring gene coiled-coil domain-containing protein 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel osteopontin-like protein is expressed in the trout ovary during ovulation. Bobe J, et al. FEBS Lett, 2001 Feb 2. PMID 11165234

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ossification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    osteopontin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001124267.1 → NP_001117739.1  osteopontin-like protein precursor

      See identical proteins and their annotated locations for NP_001117739.1

      Status: PROVISIONAL

      Source sequence(s)
      AF204760
      UniProtKB/TrEMBL
      A0A8C7R8G2, Q9DE42
      Related
      ENSOMYP00000047519.2, ENSOMYT00000051698.2

    RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_OmykA_1.1 Primary Assembly

    Genomic

    1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

      Range
      17935728..17940707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials