U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01341 long intergenic non-protein coding RNA 1341 [ Homo sapiens (human) ]

    Gene ID: 149134, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01341provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1341provided by HGNC
    Primary source
    HGNC:HGNC:49457
    See related
    AllianceGenome:HGNC:49457
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in ovary (RPKM 1.2), testis (RPKM 1.0) and 21 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01341 in Genome Data Viewer
    Location:
    1q44
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (246789617..246791486)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (246217243..246219112)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (246952919..246954788)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:246931623-246932281 Neighboring gene ribosomal protein L35a pseudogene 6 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:246939407-246940606 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2038 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:246957595-246958236 Neighboring gene kinesin family member 28, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2861 Neighboring gene MPRA-validated peak823 silencer Neighboring gene MPRA-validated peak824 silencer Neighboring gene AT-hook containing transcription factor 1 Neighboring gene MPRA-validated peak825 silencer Neighboring gene MPRA-validated peak826 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2862 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2039 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2863 Neighboring gene ZNF670-ZNF695 readthrough (NMD candidate) Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2865 Neighboring gene zinc finger protein 695 Neighboring gene Sharpr-MPRA regulatory region 11618 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:247165417-247165917 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2040

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Clone Names

    • MGC120210, MGC120211, MGC120212, MGC120213

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015422.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591848

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      246789617..246791486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      246217243..246219112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207326.1: Suppressed sequence

      Description
      NM_207326.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.