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    FGF14-IT1 FGF14 intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 283480, updated on 17-Sep-2024

    Summary

    Official Symbol
    FGF14-IT1provided by HGNC
    Official Full Name
    FGF14 intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:42774
    See related
    Ensembl:ENSG00000243319 AllianceGenome:HGNC:42774
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 3.3) See more
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    Genomic context

    See FGF14-IT1 in Genome Data Viewer
    Location:
    13q33.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (102292320..102394519, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (101508335..101610529, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (102944670..103046869, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 14 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:102720635-102721136 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:102721137-102721636 Neighboring gene microRNA 4705 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:102844049-102845248 Neighboring gene uncharacterized LOC107984615 Neighboring gene ribosomal protein L39 pseudogene 29 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:102985874-102986457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:103004521-103005022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7964 Neighboring gene FGF14 antisense RNA 1 Neighboring gene FGF14 antisense RNA 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7965 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr13:103244249-103244798 and GRCh37_chr13:103244799-103245346 Neighboring gene uncharacterized LOC107984588 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7968 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7969 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5481

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • FGF14 intronic transcript 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_036486.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK125748, AL356266
      Related
      ENST00000607251.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      102292320..102394519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      101508335..101610529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)