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    ercc2 excision repair cross-complementation group 2 [ Xiphophorus maculatus (southern platyfish) ]

    Gene ID: 102226605, updated on 10-Mar-2024

    Summary

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    Gene symbol
    ercc2
    Gene description
    excision repair cross-complementation group 2
    See related
    Ensembl:ENSXMAG00000003922
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xiphophorus maculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
    Also known as
    ERCC2/XPD
    Orthologs
    human zebrafish all
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    Genomic context

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    See ercc2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current X_maculatus-5.0-male (GCF_002775205.1) 18 NC_036460.1 (4532342..4547273, complement)
    101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372925.1 (2099..16609, complement)

    Chromosome 18 - NC_036460.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor cysteine-rich type 1 protein M130-like Neighboring gene scavenger receptor cysteine-rich type 1 protein M130-like Neighboring gene CRIB and BORG_CEP domain-containing protein Neighboring gene zinc finger CCCH-type containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleotide-excision repair, DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of mitotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TFIIH basal transcription factor complex helicase XPD subunit
    Names
    ERCC excision repair 2, TFIIH core complex helicase subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference X_maculatus-5.0-male Primary Assembly

    Genomic

    1. NC_036460.1 Reference X_maculatus-5.0-male Primary Assembly

      Range
      4532342..4547273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023350845.1 → XP_023206613.1  TFIIH basal transcription factor complex helicase XPD subunit

      UniProtKB/TrEMBL
      A0A3B5QRT7, Q91941
      Related
      ENSXMAP00000033417.1, ENSXMAT00000026846.1
      Conserved Domains (1) summary
      TIGR00604
      Location:7 → 717
      rad3; DNA repair helicase (rad3)

    RNA

    1. XR_002754301.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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