slc6a17 solute carrier family 6 member 17 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc6a17provided by ZNC
Official Full Name: solute carrier family 6 member 17provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8187
See related: Ensembl:ENSDARG00000068787 AllianceGenome:ZFIN:ZDB-GENE-030131-8187
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj59a05; wu:fj59a05; si:dkey-71l10.2
Summary: Predicted to enable symporter activity. Predicted to be involved in neutral amino acid transport and sodium ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be active in membrane and synaptic vesicle. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 48. Orthologous to human SLC6A17 (solute carrier family 6 member 17). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (24854600..24889528)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (24835461..24870389)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables symporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in L-leucine transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in alanine transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in glycine transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in proline transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in sodium ion transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in plasma membrane	IEA Inferred from Electronic Annotation more info
is_active_in synaptic vesicle	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: sodium-dependent neutral amino acid transporter SLC6A17

Names: solute carrier family 6 (neutral amino acid transporter), member 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001256724.2 → NP_001243653.1 sodium-dependent neutral amino acid transporter SLC6A17

Status: VALIDATED

Source sequence(s)

BX324132, CR450738

UniProtKB/TrEMBL

A0A8M1P4L1, X1WEE1

Related

ENSDARP00000128592.2, ENSDART00000156570.4

Conserved Domains (1) summary

cl00456
Location:63 → 651

SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain