oip5 opa interacting protein 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: oip5provided by ZNC
Official Full Name: opa interacting protein 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-090313-328
See related: Ensembl:ENSDARG00000093597 AllianceGenome:ZFIN:ZDB-GENE-090313-328
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:dkey-71p21.8
Summary: Predicted to be involved in CENP-A containing chromatin assembly and chromosome segregation. Predicted to act upstream of or within cell division. Predicted to be located in chromatin. Predicted to be active in chromosome, centromeric region and nucleus. Orthologous to human OIP5 (Opa interacting protein 5). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (33256847..33259799)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (33126397..33129349)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in CENP-A containing chromatin assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cell division	IEA Inferred from Electronic Annotation more info
involved_in chromosome segregation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in chromatin	IBA Inferred from Biological aspect of Ancestor more info
located_in chromosome	IEA Inferred from Electronic Annotation more info
is_active_in chromosome, centromeric region	IBA Inferred from Biological aspect of Ancestor more info
located_in chromosome, centromeric region	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein Mis18-beta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001145620.1 → NP_001139092.1 protein Mis18-beta

Status: PROVISIONAL

Source sequence(s)

BX284673

UniProtKB/TrEMBL

A0A8N7UZ97, B8A4N0

Related

ENSDARP00000122996.1, ENSDART00000146144.2

Conserved Domains (1) summary

pfam03226
Location:47 → 143

Yippee-Mis18; Yippee zinc-binding/DNA-binding /Mis18, centromere assembly