U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    cenatac centrosomal AT-AC splicing factor [ Danio rerio (zebrafish) ]

    Gene ID: 767736, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    cenatacprovided by ZNC
    Official Full Name
    centrosomal AT-AC splicing factorprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060929-1174
    See related
    Ensembl:ENSDARG00000059606 AllianceGenome:ZFIN:ZDB-GENE-060929-1174
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ccdc84; zgc:153059
    Summary
    Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 4. Orthologous to human CENATAC (centrosomal AT-AC splicing factor). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See cenatac in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (58687541..58696138)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (58017825..58026429)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uroplakin 2 Neighboring gene forkhead box R1 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 12b Neighboring gene TLC domain containing 5b Neighboring gene melanoma cell adhesion molecule a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success. Cheung CT, et al. PeerJ, 2018. PMID 30155373, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC153059

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    centrosomal AT-AC splicing factor
    Names
    coiled-coil domain containing 84

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327927.1 → NP_001314856.1  centrosomal AT-AC splicing factor

      Status: VALIDATED

      Source sequence(s)
      CT955996, CU571386
      UniProtKB/TrEMBL
      A0A8M1P9K5, F1QIL3
      Related
      ENSDARP00000077450.5, ENSDART00000083015.5
      Conserved Domains (1) summary
      pfam14968
      Location:5 → 322
      CCDC84; Coiled coil protein 84

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      58687541..58696138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009301864.4 → XP_009300139.1  centrosomal AT-AC splicing factor isoform X1

      UniProtKB/TrEMBL
      A0A8M3ASU1
      Conserved Domains (1) summary
      pfam14968
      Location:5 → 321
      CCDC84; Coiled coil protein 84

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001076705.1: Suppressed sequence

      Description
      NM_001076705.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools